identify_group_variant_breakdown — calculate_variant_within

calculate_variant_within_group is used to identify proportion of different samples having the same profile.

calculate_variant_within_group(pattern, meta, target, get_count = FALSE)

Arguments

pattern: list of sequences' pattern (profile)
meta: metadata of the sequences
target: column name of the target group
get_count: whether to return the count of samples rather than the raw number, default to FALSE.

Will return the Simpson's index of the list of patterns.