combine_search_string_result_from_files — combine_search_string_result_from

combine_search_string_result_from_files combine_search_string_result combines the search results from temp file generated from search_from_fastq_reads

combine_search_string_result_from_files(
  result_files,
  search_table,
  read_length_files = c(),
  append_to_current_result = NULL,
  bp = MulticoreParam()
)

Arguments

result_files: the output files from search_from_fastq_reads to combine
search_table: a dataframe with the following columns: - "id","type","sequence","strand","result","extra","match_ref_seq"
read_length_files: the read_length output files from search_from_fastq_reads
append_to_current_result: the fastq_search_result of result to append to
bp: BiocParallel backend to use for parallelization

Value

will return a fastq_search_result object containing read_lengths and a dataframe containing: - `sequence`, `search_id`, `reads`, `raw_match`, `mean_qualities`, `indexes`, `id`, `type`, `strand`, `result`, `extra`, `match_ref_seq`, `n_reads`