full_merge_1 — full_merge

full_merge_1 is used to merge 2 fasta, where a position exist only in 1 of the fasta, the fasta without allele in that positions are given reference genome's allele at that position.

full_merge_1(
  fasta_1,
  fasta_2,
  meta_1,
  meta_2,
  ref,
  bp = BiocParallel::SerialParam(),
  ...
)

Arguments

fasta_1: fasta read into memory to join
fasta_2: fasta read into memory to join
meta_1: meta file for `fasta_1` denoting all positions of SNPs and position in reference genome
meta_2: meta file for `fasta_2` denoting all positions of SNPs and position in reference genome
ref: name of the reference genome (needs to be in both fasta files)
bp: the BiocParallel backend
...: all other arguments

Value

merged fasta and meta