generate_kmer_search_string

Source: R/search_string_generation.R

generate_kmer_search_string generate the search strings to detect genes' presence

generate_kmer_search_string(
  gene_seq,
  k,
  id_prefix = NULL,
  bp = MulticoreParam()
)

Arguments

gene_seq

sequences to generate k_mers from

k

kmer length

id_prefix

prefix for the gene id

bp

BiocParallel backend to use

Value

a dataframe containing the search strings