process_snp_result
processes the SNP result from infer_from_combined
process_snp_result(
partial_result,
search_table,
count_measure = "n_reads",
...
)
the result from infer_from_combined
with only SNP
a dataframe with the following columns: - "id","type","sequence","strand","result","extra","match_ref_seq"
the column name of the count measure to use for removing the conflicts
ignored
a list containing: - result: a dataframe containing the following columns: - type, rank, result, reads_count, proportion_matched, pass_filter, proportion_scheme_found, details - snps_found: a vector containing the SNPs ID that have been identified without conflict - proportion_snps_found: the proportion of SNPs found without conflict