read_sequences_from_fastq
get the sequences
from a fastq file, it completely ignores the quality scores
read_sequences_from_fastq(
fastq_file,
force_to_upper = TRUE,
skip_n_reads = 0,
max_n_reads = -1,
output_quality = TRUE,
quality_offset = 33,
bp = MulticoreParam()
)
location of the fastq file
whether to transform sequences to upper case, default to TRUE
number of reads to skip, default to 0
maximum number of reads to read, default to -1 (all)
whether to output the quality scores, default to TRUE
the quality offset to use, default to 33
BiocParallel backend to use for parallelization
will return a list of sequences, with qualities as attribute