sequence_reads_match_count look for the search sequences in reads and return the matches indexes and mean qualities

sequence_reads_match_count(search_sequence, reads, qualities)

Arguments

search_sequence

the search sequence to look for where `.` stands for any character.

reads

the sequences reads to search for.

qualities

the qualities of each bases in the reads.

Value

will return a list containing for each read: - count, mean_quality, indexes